First thing. A previous poster stated that ceramics will prevent damage to housings. I believe that they meant carbon apex seals, because if a ceramic seal lets go, that half of the engine is ruined.
The most important thing to decide is what your budget is for upgrades. You can do anything from $100 to $40,000, but it will depend on if you have the funds to do these upgrades. I don't agree with 3mm seals unless you are using older rotors for some reason that came that way. Other than that, 3mm seals are used to cover poor tuning or a poor setup. They seal less and weigh more than 2mm seals. In a normally aspirated setup, you don't need anything more than 2mm seals. If you bridgeport, then you will need carbon or another 1 piece design seal. 4 port irons are the best for heavily modified N/A setups, and I would go with 89-91 N/A rotors, and if your budget allows, have Racing Beat make them super lightweight and balance the assembly. If your budget allows, get a good EFI stand alone system. The stock ECU can be used with piggy back units, but performance isn't near what it is with a stand alone EMS.
If budget isn't a problem, then get a full blown peripheral port 13B. Mine make approx 325hp at the flywheel with a good ECU, but the engine alone typically runs around the $10k to $12k range without the ECU. Or if you are looking for torque, then go with an N/A 20B
If you are limited on budget, then do the regular first things. The flywheel is the best bang for the buck upgrade there is on an N/A FC hands down.
Just my .02