Ok update from the shop, the flywheel looks to have been a flywheel for a 2000-2002 model which is slightly different than for the 98-99 model. The clutch didnt line up correctly is wat i was told, clutch was about 50% worn when they installed it at A&H. The slave cylinder they cannot figure out why it went bad, the spring on it is stuck fully extended. The axle does have some movement in it such as up and down with the suspension/wheels so it only rubbed some of the time. I was told the axles look to have been FORCED into place, i do understand it take a lil force to get them in place but they were forcefully put in aka the ends of the axles that seat in the tranny have damage to them. The new parts i had to get were the slave cylinder, clutch kit, right and left axles and all the transmission seals.
Since i got the car back not even 200 miles have been put on it... It looks to the tech workin on my car and i quote like "they used various parts from various year 98-02 accords."