ok first off, check out this thread..... http://honda-tech.com/zerothread/1901557

second, give us the codes that its throwing.

Last, if you changed all the wires, cap, rotor, plugs, and its still doing it, go to the local auto store and pick up a timing gun. This tool will help determine where your timing is at. Seems to me, that you may have jumped a tooth, lining up the marks on the crank isn't always accurate.